FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16700444
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1621103597.06948509871953No Hit
NTCGCTGA1880841.1262215543490939No Hit
TTCGCGGA373440.22361082136498886No Hit
TTCGCTAA322780.19327629852236264No Hit
TNCGCTGA291240.174390573088955No Hit
TTCGCTGG193940.11612864903472028No Hit
TTCGCTGC177180.10609298770739269No Hit
GTCGCTGA169010.10120090220355818No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)