FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20293507
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1969062197.0291679994No Hit
NACATCCT1808250.8910485506521864No Hit
CACATCCA682360.3362454798965994No Hit
AACATCCT321960.15865173032931174No Hit
CNCATCCT314340.15489683473635188No Hit
CACATCGT293540.14464725096554282No Hit
CACGTCCT263650.12991840197951No Hit
CACATCAT236140.11636234190571398No Hit
CACAGCCT234110.11536202195115905No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)