FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20312799
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1973182797.13987225492656No Hit
NACATCCT2008990.9890266722966146No Hit
CACATCCA699330.3442804706530105No Hit
CNCATCCT576350.28373736184757203No Hit
AACATCCT267440.13166083118333421No Hit
CACAGCCT205030.1009363603706215No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)