FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20186698
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1957870496.98814536186156No Hit
NACATCCT2195441.087567664607654No Hit
CACATCCA678410.33606784031742093No Hit
AACATCCT319690.15836666303721392No Hit
CNCATCCT290900.14410479613852648No Hit
CACATGCT237750.11777557676842443No Hit
CGCATCCT232060.11495688893745773No Hit
CACAGCCT224420.1111722184579172No Hit
CCCATCCT210260.10415769830211954No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)