FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16783702
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1632396697.26081885867612No Hit
NTCGCTGA1606750.9573275311966336No Hit
TTCGCTAA347930.20730229838446845No Hit
TNCGCTGA338700.20180291570953773No Hit
TTCGGTGA232340.13843191448465897No Hit
TTCGCTGG179290.10682386996623272No Hit
GTCGCTGA176750.10531049705243814No Hit
TTCGCGGA172330.10267698985599244No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)