FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16665228
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1606669396.40847997999187No Hit
NTCGCTGA2238961.34349197022687No Hit
TTCGCTAA378240.22696359149721804No Hit
TNCGCTGA361140.21670270577756273No Hit
TTGGCTGA286020.17162681482665582No Hit
TTCGCTGG267980.1608018804183177No Hit
TTCGCGGA264670.15881570897199848No Hit
TGCGCTGA192520.11552197185661067No Hit
TTCGCTGC186780.11207767454486672No Hit
TTAGCTGA180320.10820133993966359No Hit
TTCGGTGA177650.10659920164308584No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)