FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23309481
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2273519097.53623429024438No Hit
NGTCCAGA1328780.5700598825001724No Hit
GGGCCAGA457230.19615623359439022No Hit
GGTCCGGA413240.17728408453195504No Hit
AGTCCAGA303010.12999431433072234No Hit
TGTCCAGA274980.1179691645644105No Hit
GGTACAGA262160.11246925660850192No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)