FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20049893
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1940264596.77181319621008No Hit
NACATCCT2233841.1141406091294352No Hit
CACATCCA677420.337867139739848No Hit
CACATGCT462260.2305548463525466No Hit
CNCATCCT352720.17592113833225942No Hit
CACATACT314790.15700333163872746No Hit
AACATCCT309950.15458935366886994No Hit
CACAGCCT229020.11422504848280236No Hit
CGCATCCT211520.10549682235211927No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)