FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21582535
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2097237397.17289002427194No Hit
NGTCGGAT1959020.9076876279825331No Hit
TGTCGGGT568760.2635278941977854No Hit
TGGCGGAT365310.1692618591838262No Hit
TGTCGGCT353160.163632307326271No Hit
TNTCGGAT331420.15355934787085948No Hit
TGTAGGAT270360.1252679539266356No Hit
TGTGGGAT240840.11159022793198296No Hit
TGCCGGAT227650.1054788049689251No Hit
TGTCGGAA225590.10452432950994867No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)