FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21599184
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2102197497.32763052530132No Hit
NGTCGGAT2188491.0132280923205248No Hit
TNTCGGAT609760.2823069612259426No Hit
TGTCGGGT297610.13778761271722118No Hit
TGGCGGAT296400.13722740636868505No Hit
TGTCGGCT272990.1263890339560976No Hit
TGTCGGAA225170.10424930867758708No Hit
TGCCGGAT216100.10005007596583279No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)