FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20454761
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG12050.080.012789
TTTGCGC31750.079.620841
CGCCGAA28650.078.773021
CGGTACG32700.074.618741
TGCGCGA30950.073.629381
ACGACCG29950.073.1519241
TCACGCG31100.069.695638
GTGCGAC35800.068.9760361
GCGCTAG34600.068.191641
TTACCCG38800.067.608721
GGCGACT39850.067.114431
GACGCGT32050.066.987071
TAGGCGC39050.066.4253161
ATAACGC37700.066.2772451
GCCGGAT39450.065.751811
AACGCGT29550.065.519683
CGTTGCG15850.064.946377
TCGTACG37150.064.394678
GTTACGC31400.064.18158
TCGACGG36600.063.4643141
Produced by FastQC (version 0.11.5)