FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19994673
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1942449497.14834546181376No Hit
NACATCCT1137820.5690615695490494No Hit
CACATCCA697080.34863285836182467No Hit
AACATCCT557790.2789693034739803No Hit
CACATGCT442880.2214989962576532No Hit
CACAGCCT316240.1581621264823886No Hit
CACATACT288670.14437345386943815No Hit
GACATCCT226310.11318514686386719No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)