FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19007391
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1844515297.04199803118692No Hit
NGGATCTA2078541.0935430328128672No Hit
AGGATGTA332570.17496877925013485No Hit
AGGAGCTA313320.16484113995445246No Hit
ANGATCTA277740.14612210586923793No Hit
AGGGTCTA243210.1279554884728788No Hit
AGGATCAA204510.10759498765506534No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)