FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17790437
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1712118196.23811376864998No Hit
NATGCTTA2385541.3409114121255143No Hit
CATGCTAA480030.2698247378633813No Hit
CAGGCTTA393610.22124807839177868No Hit
CNTGCTTA384500.216127349766619No Hit
CATGCGTA336890.18936578117783168No Hit
CGTGCTTA259940.1461122062375421No Hit
CATGCTGA238640.13413948179013252No Hit
AATGCTTA200690.11280779668312814No Hit
CATGCTTG190540.10710248432908083No Hit
CATGGTTA179150.10070016829828296No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)