FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18799892
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1808564396.20078136619082No Hit
NGGATCTA2512191.3362789530918582No Hit
AGGAGCTA455920.2425120314520956No Hit
AGGATGTA440690.23441092108401473No Hit
ANGATCTA407240.2166182656793986No Hit
AGGGTCTA354070.18833618831427332No Hit
AGGATCAA271400.14436253144432956No Hit
AGGAACTA223020.11862834105642736No Hit
AGGATCGA209900.11164957756140302No Hit
AGGATCTG205010.10904849878924835No Hit
AGGCTCTA197020.1047984743742145No Hit
AAGATCTA188320.10017078821516634No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)