FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17826454
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1733664497.25234194080326No Hit
NATGCTTA1023410.5740962279991298No Hit
CATGCGTA504420.2829614908270596No Hit
AATGCTTA453570.254436468408131No Hit
CATGCTAA421680.23654732455484417No Hit
CAGGCTTA251420.14103758380662806No Hit
GATGCTTA206030.11557542515185576No Hit
TATGCTTA182450.1023478926319278No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)