FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17983882
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1756455497.66831210302648No Hit
NATGCTTA1283420.7136501451688796No Hit
CATGCTAA420570.23385940810777117No Hit
AATGCTTA249890.13895220175488252No Hit
CATGCGTA236290.13138987455544915No Hit
CAGGCTTA219070.1218146337926372No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)