FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19243807
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1868000097.07018990577072No Hit
NGCAATTC1823320.9474840399303526No Hit
AGCAATTA467180.2427690113499891No Hit
AGCAGTTC392970.2042059557134407No Hit
ANCAATTC384380.19974218199132845No Hit
AGCACTTC271060.1408557049028812No Hit
AGCAAGTC242180.12584827939710683No Hit
AGCAATGC239880.12465308969269959No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)