FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20661103
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA2010272197.29742405330441No Hit
NATAGCGA1978310.9575045436828808No Hit
CNTAGCGA418850.2027239300825324No Hit
CATAGCAA269320.13035122084237227No Hit
CATAGCGC222590.10773384170244928No Hit
AATAGCGA220720.1068287593358399No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)