FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20819328
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA2026749397.34941012505303No Hit
NATAGCGA1855340.8911622891958857No Hit
CATAGCAA370810.17810853453098968No Hit
CNTAGCGA321460.1544045994183866No Hit
CATGGCGA312370.15003846425782813No Hit
AATAGCGA243580.11699705197016924No Hit
CATAGCGC216980.10422046283146123No Hit
CAGAGCGA216320.10390344971749328No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)