FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18957728
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1838640696.98633718133313No Hit
NGGATCTA1809390.9544339912462084No Hit
AGGAGCTA482170.25433954954939747No Hit
ANGATCTA382030.20151676403417118No Hit
AGGATGTA303140.15990312763217196No Hit
AGGGTCTA250860.1323259833667832No Hit
AGGAACTA250400.13208333825656746No Hit
AGGATCAA233810.12333228960769982No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)