FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20233046
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1927749495.27727065909897No Hit
NACATCCT4182882.0673506104814865No Hit
CACATCCA711620.35171174918497194No Hit
CCCATCCT331980.1640781126084525No Hit
CNCATCCT330800.1634949082802461No Hit
CACAGCCT320140.15822629968814383No Hit
CACATGCT268630.13276794803906442No Hit
CACCTCCT248460.12279910795438315No Hit
AACATCCT222370.10990436140954753No Hit
CACATCCC216510.10700810940675962No Hit
CGCATCCT209250.1034199200654217No Hit
CACATCGT207070.10234247478110808No Hit
CACGTCCT204230.10093883046576378No Hit
CACATCCG204090.10086963673190878No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)