FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21198226
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2034414695.9709836096662No Hit
NGTCGGAT3342591.576825343781126No Hit
TGTCGGCT643580.30360087679035025No Hit
TGTCGGGT532690.2512898956733455No Hit
TGGCGGAT458570.21632470566169074No Hit
TGCCGGAT434080.20477185213517396No Hit
TGTCGGTT327100.15430536498667388No Hit
TGTCGGAG232340.1096035111617359No Hit
TGTCGGAA230930.10893836116286333No Hit
TGACGGAT214490.10118299521856215No Hit
TGTTGGAT212810.10039047607096933No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)