FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19359596
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1846774195.39321481708606No Hit
NGCAATTC4004362.0684109317157238No Hit
AGCAATTA454010.23451419130853762No Hit
AGCACTTC418120.21597558130861824No Hit
AGCAGTTC341560.17642930152054825No Hit
ANCAATTC293890.15180585379984168No Hit
AGCAATTT272970.14099984317854566No Hit
CGCAATTC270820.13988928281354632No Hit
AGCATTTC268450.1386650837135238No Hit
AGCAATGC248770.12849958232599482No Hit
AGCAAGTC213770.11042069266321466No Hit
AGCCATTC212000.10950641738598264No Hit
AGCAATCC204920.10584931627705454No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)