FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16719486
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1605203396.00793349747714No Hit
NTCGCTGA3169851.8959015845343572No Hit
TTCGCTGC435270.2603369505497956No Hit
TTCGCTGG330160.19747018538727804No Hit
TTCGCTAA309260.18496980110512967No Hit
TTCGCTGT270360.16170353562304488No Hit
TTGGCTGA219340.13118824346633623No Hit
TTTGCTGA204990.12260544373194247No Hit
TNCGCTGA181690.10866960862313589No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)