FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16764463
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1603306295.63719398587357No Hit
NTCGCTGA3387172.020446464643693No Hit
TTCGCTGC375850.22419447613681392No Hit
TTGGCTGA316810.18897712381243587No Hit
TTCGCTAA310330.18511180465488217No Hit
TTCGCTGG260900.15562681608113543No Hit
TTTGCTGA252880.15084288712379276No Hit
TTCGCTGT233990.13957500457962774No Hit
GTCGCTGA208650.12445969787400885No Hit
ATCGCTGA188020.11215390555605628No Hit
TTAGCTGA187230.11168267065876193No Hit
TTCTCTGA171920.10255025764917135No Hit
CTCGCTGA170230.10154217286888342No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)