FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19712587
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGAA31600.081.935821
ACGACCG27500.078.638071
TGCGCGA30200.077.9401551
GCGCTAG35600.076.655291
TTACGCG11100.076.409119
CGGTACG31350.075.08111
GTGCGAC36050.073.045931
TTTGCGC31700.068.451191
CGATCGG35750.065.428851
TTACCCG37950.065.318531
ATAACGC36150.065.111831
GCGCGTA30700.064.930561
GTTCGCG40800.064.6730658
CAACGCG24000.064.637548
TAGGCGC34700.064.441011
TCGCGAT22950.063.804458
GGCGACT41800.063.7016261
CGAACGC33550.063.1419751
GACGCGT30450.062.564891
CCGCTAT38300.061.264681
Produced by FastQC (version 0.11.5)