FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19682059
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1891356996.09547964468554No Hit
NACTTGAC3716901.888471119815259No Hit
CACTTGAC374350.19019859660008134No Hit
AACTTGCC343050.1742957888704632No Hit
AGCTTGAC269090.1367184195515317No Hit
AACTTGAA263860.13406117723760508No Hit
TACTTGAC231830.11778747335327061No Hit
ANCTTGAC230040.11687801565882919No Hit
ACCTTGAC227710.11569419642528254No Hit
AACTTGAG225180.1144087618068821No Hit
AACTTGGC204920.10411512332119317No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)