FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19712587
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1887319695.74185265485448No Hit
NACTTGAC3994442.0263398203391567No Hit
CACTTGAC438280.22233509990342717No Hit
AACTTGCC327480.16612735811895213No Hit
AAGTTGAC312980.15877165183849284No Hit
TACTTGAC279730.14190425640226725No Hit
AGCTTGAC277420.14073241629827682No Hit
GACTTGAC271320.13763794675960087No Hit
ACCTTGAC248950.12628986748416127No Hit
AACTTGGC200470.1016964440030119No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)