FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005485985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20062203
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1929772696.18946633128974No Hit
NACATCCT3607961.7983867474573954No Hit
CACATCCA629160.3136046425210631No Hit
CCCATCCT343200.1710679530059585No Hit
CACAGCCT251380.12530029728041334No Hit
CNCATCCT237920.11859116369224258No Hit
CACCTCCT215540.10743585836510577No Hit
CGCATCCT211740.10554174932832651No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)