FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005485986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005485986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18763067
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1790325495.4175242245844No Hit
NGGATCTA3773612.0111903880106596No Hit
AGGCTCTA427180.22767066812691122No Hit
AGGGTCTA388550.20708234959668373No Hit
AGGTTCTA361660.19275100387372704No Hit
CGGATCTA348900.1859504099196576No Hit
AGGAGCTA303650.1618338835543251No Hit
AGGATGTA283970.15134519319256282No Hit
AGGATCTC279230.14881895374567494No Hit
GGGATCTA221800.11821095133327617No Hit
AGTATCTA206670.11014723765576277No Hit
TGGATCTA198020.10553711714614675No Hit
AGGATCTT194090.10344257684524603No Hit
AGGATCAA187760.10006892796364261No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)