FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18763067
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG11800.090.920329
CGCCGAA29350.079.677421
TTTGCGC29700.079.233671
TGCGCGA28700.074.307461
GTGCGAC32200.073.995521
CGGTACG28450.073.6681
ACGACCG27050.069.868611
TAGGCGC37050.069.072841
GCGCGTA32400.068.545381
GCGCTAG31300.066.960211
CCGCTAT38000.066.571921
GACGCGT30000.066.430011
TTACCCG37100.066.20471
GTTCGCG41700.065.8846748
GTTACGC30500.065.5979848
GGCGACT39200.065.284411
ATAACGC35800.064.5004651
GTACCGT44150.064.198868
TACGAAC41350.063.8462221
CGAACGC35800.062.8571431
Produced by FastQC (version 0.11.5)