FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18957700
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1804263695.17312754184316No Hit
NGGATCTA3918112.0667644281743036No Hit
AGGCTCTA403610.21290029908691455No Hit
AGGGTCTA385630.20341602620571061No Hit
AGGTTCTA363350.19166354568328436No Hit
AGGAGCTA361300.19058219087758538No Hit
AGGATGTA345450.18222147201401015No Hit
CGGATCTA338800.17871366252235238No Hit
AGGATCTC322210.16996260094842727No Hit
ANGATCTA279220.1472857994376955No Hit
AGGATCAA247380.13049051308966805No Hit
AGGATCTT232610.12269948358714401No Hit
GGGATCTA204440.10784008608639233No Hit
AGGATCTG197820.10434810129920824No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)