FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20186956
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA30700.079.56961
GTGCGAC33550.078.512351
TTACGCG11750.077.730949
CGCCGAA29850.076.905561
TTTGCGC33050.075.0249941
ACGACCG30200.074.79611
GACGCGT32400.070.171531
GCGCTAG34300.069.502171
TTACCCG37300.069.23821
CGGTACG33450.068.8486941
GGCGACT42150.065.984471
GCGCGTA37800.065.791891
CCGCTAT40000.065.30041
TCACGCG29100.064.516098
CGTTGCG15200.064.379597
ACGCCGA39550.064.369051
CGAACGC38700.064.261851
AACCGCG39700.063.755171
ATAACGC36650.062.837351
CGCGGTA38450.062.5747151
Produced by FastQC (version 0.11.5)