FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18049430
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1727083495.68631253175309No Hit
NATGCTTA3836462.1255297258694594No Hit
CATGCTAA503360.2788786127872182No Hit
CATGCTGA275550.15266410074999598No Hit
CCTGCTTA263140.14578853736655395No Hit
CAGGCTTA251020.13907364387684265No Hit
CATGCTTC210850.11681809342455689No Hit
CNTGCTTA195230.10816408052775074No Hit
CACGCTTA192350.10656846227276984No Hit
CGTGCTTA187440.10384815476167392No Hit
CATGCGTA180820.10018044891168308No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)