FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19119415
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1827578595.5875742014073No Hit
NGCAATTC3846962.0120699299638614No Hit
AGCACTTC426050.22283631586008254No Hit
AGCAATTA377410.19739620694461624No Hit
AGGAATTC320490.1676254215937046No Hit
AGCAGTTC275960.14433496003931082No Hit
CGCAATTC274460.14355041720680262No Hit
AGCATTTC244340.12779679713003772No Hit
AGCAATTT222490.1163686232031681No Hit
AGCCATTC213070.11144169421501651No Hit
AGAAATTC202860.10610157266841061No Hit
GGCAATTC192700.10078760254955499No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)