FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19253791
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1855765796.3844315127343No Hit
NGCAATTC3299121.7134911249426152No Hit
AGCACTTC450320.23388640709769834No Hit
AGCAATTA374650.19458505600273732No Hit
AGCAGTTC262080.1361186480106697No Hit
AGCATTTC236490.1228277589592616No Hit
CGCAATTC220260.11439825019394882No Hit
AGCAATTT209080.1085916015188905No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)