FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19108758
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1832667595.90720129481988No Hit
NGCAATTC3603921.8860043127868382No Hit
AGCAATTA478540.25042967209067174No Hit
AGCACTTC417480.2184757376696068No Hit
AGCAGTTC265100.13873219808425016No Hit
AGCAATTT264570.13845483835213152No Hit
AGCATTTC232420.12163009233776471No Hit
CGCAATTC220180.11522465248657186No Hit
AGGAATTC204840.1071969198626096No Hit
ANCAATTC204480.10700852457286862No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)