FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21470863
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2065460196.19828043241671No Hit
NGTCGGAT3890601.8120370848624014No Hit
TGTCGGCT583380.27170775576184336No Hit
TGTCGGGT451330.21020580309231165No Hit
TGCCGGAT396760.18478996396185846No Hit
TGGCGGAT358270.1668633440584107No Hit
TGTCGGTT275120.1281364423963769No Hit
TNTCGGAT248350.11566838277529878No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)