FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18120052
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1728831095.409825534717No Hit
NATGCTTA3779862.086009466198No Hit
CATGCTAA455160.25119133212200495No Hit
CNTGCTTA288120.15900616620747005No Hit
CATGCGTA253970.14015964192597238No Hit
CATGCTTC245590.1355349311359592No Hit
CAGGCTTA226350.12491686006199099No Hit
CCTGCTTA225630.1245195102089111No Hit
CATGCTTT221820.12241686723636334No Hit
CATGCTGA205670.113504089281863No Hit
CATGCTTG199260.10996657183986007No Hit
CGTGCTTA189260.10444782388041712No Hit
CACGCTTA183920.10150081247007459No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)