FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20567545
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1974638496.00749141426455No Hit
NATAGCGA3873481.8832972044062626No Hit
CATAGCGC514610.25020487374647776No Hit
CATAGCGT363130.1765548586377227No Hit
CATAGCGG355010.17260689109954544No Hit
CAGAGCGA245490.11935794962403146No Hit
CATCGCGA231740.11267265976566479No Hit
CATAGCAA227640.11067922788062455No Hit
CNTAGCGA221070.10748487483557226No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)