FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20720610
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1995671496.31335177873625No Hit
NATAGCGA3070931.4820654411235963No Hit
CATAGCGC478300.23083297258140564No Hit
CATAGCGT316090.15254859774881147No Hit
CATAGCAA283930.13702781916169457No Hit
CATAGCGG269200.1299189550886774No Hit
CATCGCGA250960.12111612544225292No Hit
CAGAGCGA213840.10320159493373988No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)