FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20884488
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTGCGC31000.079.052911
CGCCGAA32400.078.1280751
CGGTACG31850.077.864651
TTACGCG12550.077.393789
ACGACCG32300.075.644051
TGCGCGA32600.072.697251
TTACCCG40750.071.6619341
GCGCTAG34800.069.999011
GTGCGAC33700.069.453451
ATAACGC42000.066.209911
GGCGACT42000.066.209911
CCGCTAT42350.066.182471
TAGGCGC41800.066.000111
GACGCGT32600.064.36971
GCGCGTA31700.064.3455661
CGAACGT22900.064.260643
AACGCGT30800.064.2534563
TTCCGCG18750.064.172927
GTACGCT29350.063.9641538
CGAACGC37500.063.589461
Produced by FastQC (version 0.11.5)