FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19877610
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1905019595.83745228928427No Hit
NACTTGAC4219042.122508691940329No Hit
AACTTGCC426060.21434166381169567No Hit
CACTTGAC390160.1962811424512303No Hit
AACTTGGC364000.18312060655179369No Hit
AGCTTGAC261870.13174119021351158No Hit
ACCTTGAC255600.128586887457798No Hit
TACTTGAC243780.12264049853075898No Hit
AACTTGTC233090.1172625884097736No Hit
ANCTTGAC218250.10979690214266201No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)