FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20085290
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1930679296.12403903553297No Hit
NACATCCT2989311.4883081100646294No Hit
CACATCCA629650.31348812987016866No Hit
CCCATCCT364520.18148605272814083No Hit
CACAGCCT334750.1666642602621122No Hit
CACATGCT284910.14185008033242238No Hit
CACCTCCT219070.10906987153284818No Hit
CACATCGT218280.10867654885739764No Hit
AACATCCT213710.1064012518614369No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)