FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22688192
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2185395596.32303446656306No Hit
NTGAGCCT3409751.5028742704575138No Hit
TTGCGCCT418040.18425443508235473No Hit
TTGGGCCT289330.12752448498320185No Hit
TTGAGGCT288870.1273217363463779No Hit
TTGAGCGT276090.12168885030592125No Hit
TTGAGCCC272700.12019468100410997No Hit
TTTAGCCT270740.11933079550807751No Hit
GTGAGCCT257380.11344226988206024No Hit
TTGTGCCT244330.10769037920694607No Hit
CTGAGCCT234050.10315938793183696No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)