FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18757712
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1795418895.71630058079577No Hit
NGGATCTA3535991.8850859849005037No Hit
AGGCTCTA374430.19961389747320996No Hit
AGGATCTC347260.18512918846392354No Hit
AGGTTCTA328480.175117306417755No Hit
AGGGTCTA311880.16626761302231316No Hit
AGGAGCTA302120.16106441979704136No Hit
CGGATCTA291080.15517884057501258No Hit
AGGATGTA272590.14532156160623427No Hit
AGGATCTT233300.12437551019015539No Hit
AGGATCTG213110.11361193731943427No Hit
ANGATCTA202800.10811553136118093No Hit
AGGATCAA188840.10067325908405035No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)