FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23058440
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2216738196.13564924600276No Hit
NGTCCAGA4357051.8895684183318557No Hit
GGTCCAGC490350.2126553227364904No Hit
GGGCCAGA439430.19057230237604972No Hit
GGCCCAGA359670.15598193112803815No Hit
GGTCCAGG328970.1426679341707418No Hit
GGTCCCGA315330.1367525296594219No Hit
GGTCCAGT266170.11543278730044182No Hit
GNTCCAGA243970.10580507614565426No Hit
GGACCAGA243650.10566629832720686No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)