FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17985820
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1731691796.28094243131534No Hit
NATGCTTA3255771.8101871363107158No Hit
CATGCTAA403090.22411544205379574No Hit
CCTGCTTA241480.13426132364273632No Hit
CNTGCTTA224300.12470935436916415No Hit
CATGCTTC212250.11800963203234549No Hit
CGTGCTTA190880.10612804976364715No Hit
CATGCGTA184760.10272536920752015No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)