FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20384926
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1959535896.126706567392No Hit
NATAGCGA3180671.560304903731316No Hit
CATAGCGC519530.2548598900972218No Hit
CATAGCGT357280.17526676329362195No Hit
CATAGCGG319490.15672855520790216No Hit
CGTAGCGA277360.13606132295991655No Hit
CATAGCAA263580.12930142596544134No Hit
CCTAGCGA229430.11254885104807347No Hit
CATCGCGA228600.11214168744100421No Hit
CAGAGCGA213660.10481274251375747No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)